Here you can download results files generated by AMPHORA2 using the default options. 

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Results of the Chinese T2D Metagenomes:
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We run AMPHORA2 on the assembled metagenomes of the Type 2 Diabetes gut metagenome data from 368 Chinese samples study (http://gigadb.org/dataset/100036). Here are the metagenome assemblies: ftp://climb.genomics.cn/pub/10.5524/100001_101000/100036/AssemblyContigs/

And here are our results running AMPHORA2 on the Chinese T2D metagenomes (with the default options and the switch -Bacteria): http://www.pitgroup.org/static/amphora2_results/Chinese_T2D_Metagenomes_AMPHORA2_result/

The result files are given the same names as they are called in the study, but pushed the switch (Bacteria or Archaea) at the end (e.g. DLF001.contigs.m100-Bacteria.results).

Files with *all.contigs.m100-Bacteria.results names are concatenated results. For example the Dall.contigs.m100-Bacteria.results file was prepared by concatenated all files beginning with the letter D (and sorted the lines in alphabetical order according to the marker genes). 
	
D=Diabetes
N=None-Diabetes
L=Loan
O=Obese
F=female
M=male

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Results of Complete Genomes:
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We run the AMPHORA2 on complete genomes derived from complete genomes pages of EBI (https://www.ebi.ac.uk/genomes/)

Here are our complete genome result files generated by AMPHORA2: http://www.pitgroup.org/static/amphora2_results/Complete_Genomes_AMPHORA2_results/
	
	
If you have any questions or ideas related to AmphoraNet, please feel free contact us (kerepesics@gmail.com, Csaba Kerepesi), or visit the AmphoraVizu support forum: https://groups.google.com/forum/#!forum/amphoravizu

Last update: Apr 11, 2014.