Files in this directory were generated using GiantVirusFinder workflow. More details are below and on the http://pitgroup.org/giant-virus-finder/ page.
 
***Content of the directory phase1-result:

	- Giant virus genom vs metagenome blast results files. Example: AB897757.1-vs-SRR1245949.fasta.blast
	- Files contained candidate reads have the prefixes "Candidates-in-". Example: Candidates-in-SRR1245949.fasta
	- Unified files have the prefixes "AllGiants-vs-". Example: AllGiants-vs-SRR1245949.fasta.blast

***Content of the directory phase2-result:

	- Blast files of the candidate reads against nt have the file end ".fasta.blast". Example:  reblast-SRR1245949.fasta.blast
	- Giant virus short read sequences are in the files with the extension ".fasta". Example: reblast-SRR1245949.fasta.blast-GiantVirusFinder-0.2.fasta
	- Blast alignments of the giant virus short reads are in the files with the extension ".txt". Example: reblast-SRR1245949.fasta.blast-GiantVirusFinder-0.2-with_hits.txt
	- Blastx results run on the .fasta files are with file end ".fasta-blastx-GIs.blast". Example: reblast-SRR1245949.fasta.blast-GiantVirusFinder-0.2.fasta-blastx-GIs.blast
	- Number of giant viruses in csv: Number-of-Giants-in-Kutch-metagenomes-0.2.csv
	- Number of giant viruses in png: Number-of-Giants-in-Kutch-metagenomes-0.2.png

***Blast options:

	- phase1: megablast, word_size=16
	- phase2: blastn, word_size=7