Our paper on AmphoraNet has recently been published in the journal Gene:
Csaba Kerepesi, Dániel Bánky, Vince Grolmusz, AmphoraNet: The webserver implementation of the AMPHORA2 metagenomic workflow suite, Gene, Volume 533, Issue 2, 10 January 2014, Pages 538-540, ISSN 0378-1119, http://dx.doi.org/10.1016/j.gene.2013.10.015