Publications

  • Balázs Szalkai, Bálint Varga, Vince Grolmusz: Brain Size Bias Compensated Graph-Theoretical Parameters are Also Better in Women’s Structural Connectomes,  Brain Imaging and Behavior (2017)  http://dx.doi.org/10.1007/s11682-017-9720-0 [impact factor: 3.667]
  • Csaba Kerepesi, Vince Grolmusz: The “Giant Virus Finder” Discovers an Abundance of Giant Viruses in the Antarctic Dry Valleys,  Archives of Virology (2017) Vol. 162, No. 6, pp. 1671-1676 http://dx.doi.org/10.1007/s00705-017-3286-4  [impact factor: 2.255]
  • Csaba Kerepesi, Judit E Szabó, Veronika Papp-Kádár, Orsolya Dobay, Dóra Szabó, Vince Grolmusz, Beata G Vertessy: Life without dUTPase, Frontiers in Microbiology, DOI: http://dx.doi.org/10.3389/fmicb.2016.01768 (2016) [impact factor: 4.165]
  • Balázs Szalkai, Csaba Kerepesi, Bálint Varga, Vince Grolmusz: Parameterizable Consensus Connectomes from the Human Connectome Project: The Budapest Reference Connectome Server v3.0, Cognitive Neurodynamics, (2016) http://dx.doi.org/10.1007/s11571-016-9407-z [impact factor: 2.159]
  • Csaba Kerepesi, Balázs Szalkai, Bálint Varga, Vince Grolmusz: How to Direct the Edges of the Connectomes: Dynamics of the Consensus Connectomes and the Development of the Connections in the Human Brain, PLoS One 11(6): e0158680. http://dx.doi.org/10.1371/journal.pone.0158680, June 30, 2016 [impact factor: 3.057]
  • Balázs Szalkai, Vince Grolmusz: Significant Differences Found in Short Nucleotide Sequences of Human Intestinal Metagenomes of Northern-European and Chinese Origin, Biochimica et Biophysica Acta (BBA) – General Subjects, Available online 21 June 2016. [impact factor: 5.083]
  • Gábor Iván, Dániel Bánky, Vince Grolmusz: Fast and Exact Sequence Alignment with the Smith-Waterman Algorithm: The SwissAlign Webserver; Gene Reports, Vol. 4, September 2016, pages 26-28. http://dx.doi.org/10.1016/j.genrep.2016.02.004
  • Csaba Kerepesi, Vince Grolmusz: Evaluating the Quantitative Capabilities of Metagenomic Analysis Software, Current Microbiology, First online: 30 January 2016, http://dx.doi.org/10.1007/s00284-016-0991-2 [impact factor: 1.423]
  • Balázs Szalkai, Bálint Varga, Vince Grolmusz:  Graph Theoretical Analysis Reveals: Women’s Brains Are Better Connected than Men’s. PLoS ONE 10(7): e0130045 (2015) doi: http://dx.doi.org/10.1371/journal.pone.0130045 [impact factor: 3.234]
  • Vince Grolmusz: Identifying Diabetes-Related Important Protein Targets with few Interacting Partners with the PageRank Algorithm, Royal Society Open Science, 2:140252, (2015) http://dx.doi.org/10.1098/rsos.140252.
  • Balázs Szalkai, Csaba Kerepesi, Bálint Varga, Vince Grolmusz: The Budapest Reference Connectome Server v2.0, Neuroscience Letters, Vol. 595  (2015), Pages 60-62, DOI: http://dx.doi.org/10.1016/j.neulet.2015.03.071, [impact factor: 2.055]
  • Kata Horváti, Bernadett Bacsa, Nóra Szabó, Kinga Fodor, Gyula Balka, Miklós Rusvai, Éva Kiss, Gábor Mező, Vince Grolmusz, Beáta Vértessy, Ferenc Hudecz, Szilvia Bősze: Antimycobacterial activity of peptide conjugate of pyridopyrimidine derivative against Mycobacterium tuberculosis in a series of in vitro and in vivo models, Tuberculosis, Published online: February 12, 2015,  DOI: http://dx.doi.org/10.1016/j.tube.2015.02.026 [impact factor: 3.5]
  • Csaba Kerepesi, Balázs Szalkai, Vince Grolmusz. Visual Analysis of the Quantitative Composition of Metagenomic Communities: the AmphoraVizu Webserver, Microbial Ecology Vol. 69 (2015) pp. 695-697, DOI http://dx.doi.org/10.1007/s00248-014-0502-6 [impact factor: 3.118].
  • Gábor Iván, Vince Grolmusz. On Dimension reduction of clustering results in structural bioinformatics, Biochimica et Biophysica Acta (BBA)- Proteins and Proteomics 1844 (2014), pp. 2277-2283, [impact factor: 3.733].
  • Rafael Ördög, Dániel Bánky, Balázs Szerencsi, Péter Juhász, Vince Grolmusz, The Erdős webgraph server, Discrete Applied Mathematics, Vol. 167 No. 20. April 2014, pp. 315-317, http://dx.doi.org/10.1016/j.dam.2013.10.032. (http://www.sciencedirect.com/science/article/pii/S0166218X13004757) [impact factor: 0.718]
  • Dániel Bánky, Balázs Szalkai, Vince Grolmusz: An Intuitive Graphical Webserver for Multiple-Choice Protein Sequence Search; Gene, 2014, Vol. 539 No. 1. pp. 152-3. http://dx.doi.org/10.1016/j.gene.2014.02.007 [impact factor: 2.19].
  • Csaba Kerepesi, Dániel Bánky, Vince Grolmusz, AmphoraNet: The webserver implementation of the AMPHORA2 metagenomic workflow suite, Gene, Volume 533, Issue 2, 10 January 2014, Pages 538–540 http://dx.doi.org/10.1016/j.gene.2013.10.015, [impact factor: 2.19]
  • Orsolya Barabás, Veronika Németh, Andrea Bodor, András Perczel, Edina Rosta, Zoltán Kele, Imre Zagyva, Zoltán Szabadka, Vince I Grolmusz, Matthias Wilmanns, Beáta G Vértessy: Catalytic mechanism of α-phosphate attack in dUTPase is revealed by X-ray crystallographic snapshots of distinct intermediates, 31P-NMR spectroscopy and reaction path modelling, Nucleic Acids Research, gkt756, published on August 27, 2013, doi: 10.1093/nar/gkt756 [impact factor: 8.27]
  • Dániel Bánky, Gábor Iván, Vince Grolmusz: Equal Opportunity for Low-Degree Network Nodes: A PageRank-Based Method for Protein Target Identification in Metabolic Graphs, PLoS ONE 8(1): e54204. doi:10.1371/journal.pone.0054204, published 29 Jan 2013 [impact factor: 4.01]
  • Lilla Tóthmérész, Vince Grolmusz: Characterizing the Functional Similarity of Enzymes with high Co-Citation in Interaction Networks, Protein and Peptide Letters, Vol. 20, 2013, pp.  1181-1187 [impact factor:1.9]
  • Kata Horváti, Bernadett Bacsa, Nóra Szabó, Sándor Dávid, Gábor Mezö, Vince Grolmusz, Beáta Vértessy, Ferenc Hudecz, and Szilvia Bösze: Enhanced Cellular Uptake of a New, in Silico Identified Antitubercular Candidate by Peptide Conjugation, Bioconjugate Chem. ,2012, 23 (5), pp 900-907 DOI: 10.1021/bc200221t [impact factor: 5.002]
  • Árpád Tóth, Dániel Bánky, and Vince Grolmusz: Mathematical modeling and computer simulation of Brownian motion and hybridization of nanoparticle-bioprobe-polymer complexes in the low concentration limit, Molecular Simulation, Vol. 38, No. 1. pp. 66-71, DOI: 10.1080/08927022.2011.602217.
  • Christoph Scheich, Zoltán Szabadka, Beáta Vértessy, Vera Pütter, Vince Grolmusz, Markus Schäde: Discovery of Novel MDR-Mycobacterium tuberculosis Inhibitor by New FRIGATE Computational Screen. PLoS ONE 6(12): e28428. doi:10.1371/journal.pone.0028428 (2011). [impact factor: 4.3]
  • Árpád Tóth, Dániel Bánky, and Vince Grolmusz: 3D Brownian Motion Simulator for High-Sensitivity Nano-Biotechnological Applications, IEEE Transactions on Nanobioscience, Vol. 10, No. 4. pp. 248-249, doi: 10.1109/TNB.2011.2169331. p. 2 [impact factor 1.7](Also available as a personal preprint version).
  • Gábor Iván, Zoltán Szabadka, Vince Grolmusz: A Hybrid Clustering of Protein Binding Sites(preliminary version). FEBS Journal Vol. 277, No. 6. pp. 1494-1502 (2010)
  • Gábor Iván, Vince Grolmusz: Revealing the density-based clustering structure of the SwissProt database (poster) 17th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), Stockholm, Sweden, 27th June – 2nd July, 2009
  • Gábor Iván, Dániel Bánky, Vince Grolmusz: Finding new drug candidates against Mycobacterium tuberculosis using protein-protein interaction networks (poster) 17th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), Stockholm, Sweden, 27th June – 2nd July, 2009
  • Rafael Ördög, Vince Grolmusz: WikiPDB- A community for enhancing the PDB, (talk by Rafael Ördög). 17th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), Stockholm, Sweden, 27th June – 2nd July, 2009
  • Rafael Ördög, Zoltán Szabadka, Vince Grolmusz: DECOMP: A PDB decomposition tool on the web, Bioinformation Vol. 3 No. 10. pp. 413-414 (2009)
  • Rafael Ördög, Vince Grolmusz: On the bond graphs in the Delaunay-tetrahedra of the simplicial decomposition of spatial protein
    structures; Proceedings of the International Workshop on Practical Applications of Computational Biology & Bioinformatics (IWPACBB’09) LNCS 5518, University of Salamanca, June 10-12, 2009. Also available as a personal preprint version.
  • Gábor Iván, Zoltán Szabadka, Rafael Ördög, Vince Grolmusz, Gábor Náray-Szabó: Four Spatial Points That Define Enzyme Families,
    Biochemical and Biophysical Research Communications, Vol. 383, No. 4, pp. 417-420, (2009) doi:10.1016/j.bbrc.2009.04.022; also available as a personal preprint version.
  • Rafael Ördög, Zoltán Szabadka, Vince Grolmusz: A community portal for a better PDB. 16th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), Toronto, Canada July 19-July 23, 2008.
  • Zoltán Szabadka, Rafael Ördög, Vince Grolmusz: The Ramachandran Map of More Than 6,500 Perfect Polypeptide Chains, Biophysical Reviews and Letters, Vol 2, No. 3 (2007), pp. 1-5
  • Rafael Ordog, Zoltán Szabadka, Vince Grolmusz: Analyzing the Simplicial Decomposition of Spatial Protein Structures; 6th International Conference on Bioinformatics (InCoB 2007), Hong Kong University of Science and Technology, Hong Kong, 27th-30th August, 2007; Journal version: BMC Bioinformatics, 2008, 9(Suppl 1):S11(doi:10.1186/1471-2105-9-S1-S11), http://www.biomed central.com/1471-2105/9/S1/S11
  • Zoltán Szabadka, Gábor Iván, Vince Grolmusz: Being a Binding-Site: Characterizing Residue-Composition of Binding Sites on Proteins 6th International Conference on Bioinformatics (InCoB 2007), Hong Kong University of Science and Technology, Hong Kong, 27th-30th August, 2007. Journal version: Bioinformation 2(5), 216-221 (2007), http://www.bio information.net/002/004800022007.htm
  • Gábor Iván:Studying Binding Sites of Protein-Ligand Complexes using Data-Mining Algorithms; SEFI and IGIP Joint Annual Conference, Miskolc, Hungary, 1st-4th July, 2007
  • Zoltán Szabadka, Gábor Iván, Vince Grolmusz: Analyzing the Residue-Composition of Metal Binding Sites in the Whole Protein Data
    Bank. Mol. Biol. Cell 17(suppl), 535. (CD-ROM) (Appeared in the Proceedings of the 46th Annual Meeting of the American Society of
    Cell Biology
    , December 9-13, 2006, San Diego, CA).
  • Zoltán Szabadka, Vince Grolmusz: Re-Structuring the PDB , European Conference on Operational Research (EURO 2006) , July 2-5, 2006, Reykjavik, Iceland