Publications

  • Balázs Szalkai, Bálint Varga, Vince Grolmusz: Comparing Advanced Graph-Theoretical Parameters of the Connectomes of the Lobes of the Human Brain, Cognitive Neurodynamics, 2018, https://rdcu.be/8Gwh . [ impact factor 2.000]
  • Kristóf Takács, Bálint Varga, Vince Grolmusz: PDB_Amyloid: An Extended Live Amyloid Structure List from the PDB, FEBS Open Bio, 2018. First published: 19 September 2018, https://doi.org/10.1002/2211-5463.12524 [impact factor 2.101]
  • Balázs Szalkai, Bálint Varga, Vince Grolmusz: Mapping Correlations of Psychological and Connectomical Properties of the Dataset of the Human Connectome Project with the Maximum Spanning Tree Method,  Brain Imaging and Behavior, available online August 7, 2018, https://doi.org/10.1007/s11682-018-9937-6 , also available freely at this link. [impact factor 3.719]
  • Balázs Szalkai, Vince Grolmusz: MetaHMM: A Webserver for Identifying Novel Genes with Specified Functions in Metagenomic Samples;  Genomics, available online May 23, 2018, https://doi.org/10.1016/j.ygeno.2018.05.016 [impact factor 2.801]
  • Balázs Szalkai, Vince Grolmusz:  Human Sexual Dimorphism of the Relative Cerebral Area Volumes in the Data of the Human Connectome Project;  European Journal of Anatomy, Vol.  22, No. 3. pp. 221-225 (2018)
  • Balázs Szalkai, Vince Grolmusz: SECLAF: A Webserver and Deep Neural Network Design Tool for Biological Sequence Classification,  Bioinformatics, 2018 https://doi.org/10.1093/bioinformatics/bty116 [impact factor 7.30]
  • Csaba Kerepesi, Bálint Varga, Balázs Szalkai,  Vince Grolmusz:The Dorsal Striatum and the Dynamics of the Consensus Connectomes in the Frontal Lobe of the Human Brain,  Neuroscience Letters, Vol. 673, (2018), pp. 51-55.  https://doi.org/10.1016/j.neulet.2018.02.052  [impact factor: 2.18]
  • Balázs Szalkai, Bálint Varga, Vince Grolmusz: The Robustness and the Doubly-Preferential Attachment Simulation of the Consensus Connectome Dynamics of the Human Brain,  Scientific Reports, Vol. 7, 16118, https://doi.org/10.1038/s41598-017-16326-0 (2017)  [impact factor: 4.25]
  • Csaba Kerepesi, Balázs Szalkai, Bálint Varga, Vince Grolmusz: Comparative Connectomics: Mapping the Inter-Individual Variability of Connections within the Regions of the Human Brain,  Neuroscience Letters Vol. 662, pp. 17-21, (2018) https://doi.org/10.1016/j.neulet.2017.10.003 [impact factor: 2.18].
  • Balázs Szalkai, Vince K. Grolmusz, Vince I. Grolmusz: Identifying Combinatorial Biomarkers by Association Rule Mining in the CAMD Alzheimer’s Database, Archives of Gerontology and Geriatrics Vol. 73, pp. 300-307 (2017),  https://doi.org/10.1016/j.archger.2017.08.006  [impact factor: 2.08]
  • Balázs Szalkai, Vince Grolmusz: Near Perfect Protein Multi-Label Classification with Deep Neural Networks,  Methods Vol. 132, pp. 50-56, (2018), https://doi.org/10.1016/j.ymeth.2017.06.034 [impact factor: 3.802]
  • Csaba Kerepesi, Balázs Szalkai,  Bálint Varga, Vince Grolmusz: The braingraph.org Database of High Resolution Structural Connectomes and the Brain Graph Tools,  Cognitive Neurodynamics Vol. 11 No. 5, pp. 483-486  (2017) http://dx.doi.org/10.1007/s11571-017-9445-1 [impact factor: 2.159]
  • Balázs Szalkai, Bálint Varga, Vince Grolmusz: Brain Size Bias Compensated Graph-Theoretical Parameters are Also Better in Women’s Structural Connectomes,  Brain Imaging and Behavior (2017)  http://dx.doi.org/10.1007/s11682-017-9720-0 [impact factor: 3.667]
  • Csaba Kerepesi, Vince Grolmusz: The “Giant Virus Finder” Discovers an Abundance of Giant Viruses in the Antarctic Dry Valleys,  Archives of Virology (2017) Vol. 162, No. 6, pp. 1671-1676 http://dx.doi.org/10.1007/s00705-017-3286-4  [impact factor: 2.255]
  • Csaba Kerepesi, Judit E Szabó, Veronika Papp-Kádár, Orsolya Dobay, Dóra Szabó, Vince Grolmusz, Beata G Vertessy: Life without dUTPase, Frontiers in Microbiology, DOI: http://dx.doi.org/10.3389/fmicb.2016.01768 (2016) [impact factor: 4.165]
  • Balázs Szalkai, Csaba Kerepesi, Bálint Varga, Vince Grolmusz: Parameterizable Consensus Connectomes from the Human Connectome Project: The Budapest Reference Connectome Server v3.0, Cognitive Neurodynamics, (2016) http://dx.doi.org/10.1007/s11571-016-9407-z [impact factor: 2.159]
  • Csaba Kerepesi, Balázs Szalkai, Bálint Varga, Vince Grolmusz: How to Direct the Edges of the Connectomes: Dynamics of the Consensus Connectomes and the Development of the Connections in the Human Brain, PLoS One 11(6): e0158680. http://dx.doi.org/10.1371/journal.pone.0158680, June 30, 2016 [impact factor: 3.057]
  • Balázs Szalkai, Vince Grolmusz: Significant Differences Found in Short Nucleotide Sequences of Human Intestinal Metagenomes of Northern-European and Chinese Origin, Biochimica et Biophysica Acta (BBA) – General Subjects, Available online 21 June 2016. [impact factor: 5.083]
  • Gábor Iván, Dániel Bánky, Vince Grolmusz: Fast and Exact Sequence Alignment with the Smith-Waterman Algorithm: The SwissAlign Webserver; Gene Reports, Vol. 4, September 2016, pages 26-28. http://dx.doi.org/10.1016/j.genrep.2016.02.004
  • Csaba Kerepesi, Vince Grolmusz: Evaluating the Quantitative Capabilities of Metagenomic Analysis Software, Current Microbiology, First online: 30 January 2016, http://dx.doi.org/10.1007/s00284-016-0991-2 [impact factor: 1.423]
  • Balázs Szalkai, Bálint Varga, Vince Grolmusz:  Graph Theoretical Analysis Reveals: Women’s Brains Are Better Connected than Men’s. PLoS ONE 10(7): e0130045 (2015) doi: http://dx.doi.org/10.1371/journal.pone.0130045 [impact factor: 3.234]
  • Vince Grolmusz: Identifying Diabetes-Related Important Protein Targets with few Interacting Partners with the PageRank Algorithm, Royal Society Open Science, 2:140252, (2015) http://dx.doi.org/10.1098/rsos.140252.
  • Balázs Szalkai, Csaba Kerepesi, Bálint Varga, Vince Grolmusz: The Budapest Reference Connectome Server v2.0, Neuroscience Letters, Vol. 595  (2015), Pages 60-62, DOI: http://dx.doi.org/10.1016/j.neulet.2015.03.071, [impact factor: 2.055]
  • Kata Horváti, Bernadett Bacsa, Nóra Szabó, Kinga Fodor, Gyula Balka, Miklós Rusvai, Éva Kiss, Gábor Mező, Vince Grolmusz, Beáta Vértessy, Ferenc Hudecz, Szilvia Bősze: Antimycobacterial activity of peptide conjugate of pyridopyrimidine derivative against Mycobacterium tuberculosis in a series of in vitro and in vivo models, Tuberculosis, Published online: February 12, 2015,  DOI: http://dx.doi.org/10.1016/j.tube.2015.02.026 [impact factor: 3.5]
  • Csaba Kerepesi, Balázs Szalkai, Vince Grolmusz. Visual Analysis of the Quantitative Composition of Metagenomic Communities: the AmphoraVizu Webserver, Microbial Ecology Vol. 69 (2015) pp. 695-697, DOI http://dx.doi.org/10.1007/s00248-014-0502-6 [impact factor: 3.118].
  • Gábor Iván, Vince Grolmusz. On Dimension reduction of clustering results in structural bioinformatics, Biochimica et Biophysica Acta (BBA)- Proteins and Proteomics 1844 (2014), pp. 2277-2283, [impact factor: 3.733].
  • Rafael Ördög, Dániel Bánky, Balázs Szerencsi, Péter Juhász, Vince Grolmusz, The Erdős webgraph server, Discrete Applied Mathematics, Vol. 167 No. 20. April 2014, pp. 315-317, http://dx.doi.org/10.1016/j.dam.2013.10.032. (http://www.sciencedirect.com/science/article/pii/S0166218X13004757) [impact factor: 0.718]
  • Dániel Bánky, Balázs Szalkai, Vince Grolmusz: An Intuitive Graphical Webserver for Multiple-Choice Protein Sequence Search; Gene, 2014, Vol. 539 No. 1. pp. 152-3. http://dx.doi.org/10.1016/j.gene.2014.02.007 [impact factor: 2.19].
  • Csaba Kerepesi, Dániel Bánky, Vince Grolmusz, AmphoraNet: The webserver implementation of the AMPHORA2 metagenomic workflow suite, Gene, Volume 533, Issue 2, 10 January 2014, Pages 538–540 http://dx.doi.org/10.1016/j.gene.2013.10.015, [impact factor: 2.19]
  • Orsolya Barabás, Veronika Németh, Andrea Bodor, András Perczel, Edina Rosta, Zoltán Kele, Imre Zagyva, Zoltán Szabadka, Vince I Grolmusz, Matthias Wilmanns, Beáta G Vértessy: Catalytic mechanism of α-phosphate attack in dUTPase is revealed by X-ray crystallographic snapshots of distinct intermediates, 31P-NMR spectroscopy and reaction path modelling, Nucleic Acids Research, gkt756, published on August 27, 2013, doi: 10.1093/nar/gkt756 [impact factor: 8.27]
  • Dániel Bánky, Gábor Iván, Vince Grolmusz: Equal Opportunity for Low-Degree Network Nodes: A PageRank-Based Method for Protein Target Identification in Metabolic Graphs, PLoS ONE 8(1): e54204. doi:10.1371/journal.pone.0054204, published 29 Jan 2013 [impact factor: 4.01]
  • Lilla Tóthmérész, Vince Grolmusz: Characterizing the Functional Similarity of Enzymes with high Co-Citation in Interaction Networks, Protein and Peptide Letters, Vol. 20, 2013, pp.  1181-1187 [impact factor:1.9]
  • Kata Horváti, Bernadett Bacsa, Nóra Szabó, Sándor Dávid, Gábor Mezö, Vince Grolmusz, Beáta Vértessy, Ferenc Hudecz, and Szilvia Bösze: Enhanced Cellular Uptake of a New, in Silico Identified Antitubercular Candidate by Peptide Conjugation, Bioconjugate Chem. ,2012, 23 (5), pp 900-907 DOI: 10.1021/bc200221t [impact factor: 5.002]
  • Árpád Tóth, Dániel Bánky, and Vince Grolmusz: Mathematical modeling and computer simulation of Brownian motion and hybridization of nanoparticle-bioprobe-polymer complexes in the low concentration limit, Molecular Simulation, Vol. 38, No. 1. pp. 66-71, DOI: 10.1080/08927022.2011.602217.
  • Christoph Scheich, Zoltán Szabadka, Beáta Vértessy, Vera Pütter, Vince Grolmusz, Markus Schäde: Discovery of Novel MDR-Mycobacterium tuberculosis Inhibitor by New FRIGATE Computational Screen. PLoS ONE 6(12): e28428. doi:10.1371/journal.pone.0028428 (2011). [impact factor: 4.3]
  • Árpád Tóth, Dániel Bánky, and Vince Grolmusz: 3D Brownian Motion Simulator for High-Sensitivity Nano-Biotechnological Applications, IEEE Transactions on Nanobioscience, Vol. 10, No. 4. pp. 248-249, doi: 10.1109/TNB.2011.2169331. p. 2 [impact factor 1.7](Also available as a personal preprint version).
  • Gábor Iván, Zoltán Szabadka, Vince Grolmusz: A Hybrid Clustering of Protein Binding Sites(preliminary version). FEBS Journal Vol. 277, No. 6. pp. 1494-1502 (2010)
  • Gábor Iván, Vince Grolmusz: Revealing the density-based clustering structure of the SwissProt database (poster) 17th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), Stockholm, Sweden, 27th June – 2nd July, 2009
  • Gábor Iván, Dániel Bánky, Vince Grolmusz: Finding new drug candidates against Mycobacterium tuberculosis using protein-protein interaction networks (poster) 17th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), Stockholm, Sweden, 27th June – 2nd July, 2009
  • Rafael Ördög, Vince Grolmusz: WikiPDB- A community for enhancing the PDB, (talk by Rafael Ördög). 17th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), Stockholm, Sweden, 27th June – 2nd July, 2009
  • Rafael Ördög, Zoltán Szabadka, Vince Grolmusz: DECOMP: A PDB decomposition tool on the web, Bioinformation Vol. 3 No. 10. pp. 413-414 (2009)
  • Rafael Ördög, Vince Grolmusz: On the bond graphs in the Delaunay-tetrahedra of the simplicial decomposition of spatial protein
    structures; Proceedings of the International Workshop on Practical Applications of Computational Biology & Bioinformatics (IWPACBB’09) LNCS 5518, University of Salamanca, June 10-12, 2009. Also available as a personal preprint version.
  • Gábor Iván, Zoltán Szabadka, Rafael Ördög, Vince Grolmusz, Gábor Náray-Szabó: Four Spatial Points That Define Enzyme Families,
    Biochemical and Biophysical Research Communications, Vol. 383, No. 4, pp. 417-420, (2009) doi:10.1016/j.bbrc.2009.04.022; also available as a personal preprint version.
  • Rafael Ördög, Zoltán Szabadka, Vince Grolmusz: A community portal for a better PDB. 16th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), Toronto, Canada July 19-July 23, 2008.
  • Zoltán Szabadka, Rafael Ördög, Vince Grolmusz: The Ramachandran Map of More Than 6,500 Perfect Polypeptide Chains, Biophysical Reviews and Letters, Vol 2, No. 3 (2007), pp. 1-5
  • Rafael Ordog, Zoltán Szabadka, Vince Grolmusz: Analyzing the Simplicial Decomposition of Spatial Protein Structures; 6th International Conference on Bioinformatics (InCoB 2007), Hong Kong University of Science and Technology, Hong Kong, 27th-30th August, 2007; Journal version: BMC Bioinformatics, 2008, 9(Suppl 1):S11(doi:10.1186/1471-2105-9-S1-S11), http://www.biomed central.com/1471-2105/9/S1/S11
  • Zoltán Szabadka, Gábor Iván, Vince Grolmusz: Being a Binding-Site: Characterizing Residue-Composition of Binding Sites on Proteins 6th International Conference on Bioinformatics (InCoB 2007), Hong Kong University of Science and Technology, Hong Kong, 27th-30th August, 2007. Journal version: Bioinformation 2(5), 216-221 (2007), http://www.bio information.net/002/004800022007.htm
  • Gábor Iván:Studying Binding Sites of Protein-Ligand Complexes using Data-Mining Algorithms; SEFI and IGIP Joint Annual Conference, Miskolc, Hungary, 1st-4th July, 2007
  • Zoltán Szabadka, Gábor Iván, Vince Grolmusz: Analyzing the Residue-Composition of Metal Binding Sites in the Whole Protein Data
    Bank. Mol. Biol. Cell 17(suppl), 535. (CD-ROM) (Appeared in the Proceedings of the 46th Annual Meeting of the American Society of
    Cell Biology
    , December 9-13, 2006, San Diego, CA).
  • Zoltán Szabadka, Vince Grolmusz: Re-Structuring the PDB , European Conference on Operational Research (EURO 2006) , July 2-5, 2006, Reykjavik, Iceland