PIT Bioinformatics Group
Department of Computer Science, Eötvös University
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  • Online tools
    • AmphoraNetThe webserver implementation of the AMPHORA2 workflow for phylogenetic analysis of metagenomic shotgun sequencing data
    • AmphoraVizuChart visualization for metagenomics analysis tools AMPHORA2 and AmphoraNet
    • Giant Virus FinderSoftware for finding giant viruses in metagenomes
    • Brownian SimulatorEstimate the minimum passage time and docking ratio of nanoparticles to a specified target
    • Budapest ConnectomeView a parameterizable connectome (brain graph)
    • Budapest Amyloid PredictorThe Budapest Amyloid Predictor
    • DecompPDB entry correction and decomposition
    • MetaHMMFind genes in metagenomes, using Hidden Markov Models
    • PDB_AmyloidLive list of amyloid and amyloid-precursor proteins from the PDB
    • NascentPredict a protein-protein physical interaction network
    • ProtDictFind proteins by lots of different identifiers
    • Protein Sequence AnalysisFind matches of a short amino acid sequence in UniProt, allowing wildcards and alternatives
    • QuickKEGGFind UniProt codes for a KEGG reaction in an organism
    • SCARFOnline association rule mining tool
    • SECLAFSequence classification with neural networks
    • SwissAlignAlign a SwissProt sequence to all sequences of a taxonomy group
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Online tools

  • AmphoraNet
  • AmphoraVizu
  • Brownian Motion Simulator
  • Budapest Reference Connectome
  • Budapest Amyloid Predictor
  • Decomp
  • MetaHMM
  • Nascent
  • ProtDict
  • Protein Sequence Analysis
  • QuickKEGG
  • SECLAF
  • SCARF
  • SwissAlign

Budapest Reference Connectome

View a parameterizable connectome (brain graph).

AmphoraNet

The webserver implementation of the AMPHORA2 workflow for phylogenetic analysis of metagenomic shotgun sequencing data.

AmphoraVizu

Chart visualization for metagenomics analysis tools AMPHORA2 and AmphoraNet.

SCARF

Free online association rule mining tool.

SECLAF

Sequence classification using deep learning

The Budapest Amyloid Predictor

Predicts the amyloidogenecity of any hexapeptide.

MetaHMM

Find genes in metagenomes, using Hidden Markov Models.

PDB_Amyloid

Live list of the amyloid- and amyloid precursor molecules from the PDB

Protein sequence analysis

Find occurrences of a short amino acid sequence in UniProt, allowing wildcards and alternative amino acids.

Giant Virus Finder

The Giant Virus Finder is a software package for finding giant viruses in metagenomes.

Decomp

PDB Decomposition Tool.

ProtDict

Find proteins by lots of different identifiers, using our protein cross reference database.

Brownian Motion Simulator

Estimating the minimum passage time and docking ratio of nanoparticles to a specified target.

SwissAlign

Fast and Exact Sequence Alignment with the Smith-Waterman Algorithm.

Nascent

Protein-Protein Physical Interaction Network Mapper.

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