Category Archives: Online tools

New online tool: AmphoraVizu

We are pleased to announce the newest online tool developed by the PIT Bioinformatics Group: Online Visualization tool for metagenomics analysis tools AMPHORA2 and AmphoraNet Screenshots:

New online tool: MetaHMM

We are pleased to announce the newest online tool developed by the PIT Bioinformatics Group: METAHMM – Find genes in metagenomes, using Hidden Markov Models

Category: Online tools

New online tool: SCARF

We are pleased to announce the newest online tool developed by the PIT Bioinformatics Group: SCARF – Simple Combinatorial Association Rule Finder

Category: Online tools

Budapest Reference Connectome

View a parameterizable connectome (brain graph).

AmphoraNet

The webserver implementation of the AMPHORA2 workflow for phylogenetic analysis of metagenomic shotgun sequencing data.

AmphoraVizu

Chart visualization for metagenomics analysis tools AMPHORA2 and AmphoraNet.

SCARF

Free online association rule mining tool.

SECLAF

Sequence classification using deep learning

MetaHMM

Find genes in metagenomes, using Hidden Markov Models.

PDB_Amyloid

Live list of the amyloid- and amyloid precursor molecules from the PDB

Protein sequence analysis

Find occurrences of a short amino acid sequence in UniProt, allowing wildcards and alternative amino acids.

Giant Virus Finder

The Giant Virus Finder is a software package for finding giant viruses in metagenomes.

Decomp

PDB Decomposition Tool.

ProtDict

Find proteins by lots of different identifiers, using our protein cross reference database.

Brownian Motion Simulator

Estimating the minimum passage time and docking ratio of nanoparticles to a specified target.

Nascent

Protein-Protein Physical Interaction Network Mapper.

SwissAlign

Fast and Exact Sequence Alignment with the Smith-Waterman Algorithm.