PIT Bioinformatics Group
Department of Computer Science, Eötvös University
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Online tools
AmphoraNet
The webserver implementation of the AMPHORA2 workflow for phylogenetic analysis of metagenomic shotgun sequencing data
AmphoraVizu
Chart visualization for metagenomics analysis tools AMPHORA2 and AmphoraNet
Giant Virus Finder
Software for finding giant viruses in metagenomes
Brownian Simulator
Estimate the minimum passage time and docking ratio of nanoparticles to a specified target
Budapest Connectome
View a parameterizable connectome (brain graph)
Decomp
PDB entry correction and decomposition
MetaHMM
Find genes in metagenomes, using Hidden Markov Models
PDB_Amyloid
Live list of amyloid and amyloid-precursor proteins from the PDB
Nascent
Predict a protein-protein physical interaction network
ProtDict
Find proteins by lots of different identifiers
Protein Sequence Analysis
Find matches of a short amino acid sequence in UniProt, allowing wildcards and alternatives
QuickKEGG
Find UniProt codes for a KEGG reaction in an organism
SCARF
Free online association rule mining tool
SECLAF
Sequence classification with neural networks
SwissAlign
Align a SwissProt sequence to all sequences of a taxonomy group
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MetaHMM
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