PIT Bioinformatics Group
Department of Computer Science, Eötvös University
Skip to content
  • Online tools
    • AmphoraNetThe webserver implementation of the AMPHORA2 workflow for phylogenetic analysis of metagenomic shotgun sequencing data
    • AmphoraVizuChart visualization for metagenomics analysis tools AMPHORA2 and AmphoraNet
    • Giant Virus FinderSoftware for finding giant viruses in metagenomes
    • Brownian SimulatorEstimate the minimum passage time and docking ratio of nanoparticles to a specified target
    • Budapest ConnectomeView a parameterizable connectome (brain graph)
    • DecompPDB entry correction and decomposition
    • MetaHMMFind genes in metagenomes, using Hidden Markov Models
    • PDB_AmyloidLive list of amyloid and amyloid-precursor proteins from the PDB
    • NascentPredict a protein-protein physical interaction network
    • ProtDictFind proteins by lots of different identifiers
    • Protein Sequence AnalysisFind matches of a short amino acid sequence in UniProt, allowing wildcards and alternatives
    • QuickKEGGFind UniProt codes for a KEGG reaction in an organism
    • SCARFFree online association rule mining tool
    • SECLAFSequence classification with neural networks
    • SwissAlignAlign a SwissProt sequence to all sequences of a taxonomy group
  • Publications
  • People
  • Gallery
  • Press & Media
  • Contact

New publication: Evaluating the Quantitative Capabilities of Metagenomic Analysis Software

By root | February 10, 2016
0 Comment
  • Csaba Kerepesi, Vince Grolmusz: Evaluating the Quantitative Capabilities of Metagenomic Analysis Software, Current Microbiology, First online: 30 January 2016, http://dx.doi.org/10.1007/s00284-016-0991-2 [impact factor: 1.423]
    • Category: Uncategorized
    Post navigation
    ← Hungarian Neuroscience Doctoral Conference (HuNDoC) Interview on Radio Q on February 7, 2016 →

    Budapest Reference Connectome

    View a parameterizable connectome (brain graph).

    AmphoraNet
    The webserver implementation of the AMPHORA2 workflow for phylogenetic analysis of metagenomic shotgun sequencing data.

    AmphoraVizu
    Chart visualization for metagenomics analysis tools AMPHORA2 and AmphoraNet.

    SCARF

    Free online association rule mining tool.

    SECLAF

    Sequence classification using deep learning

    MetaHMM
    Find genes in metagenomes, using Hidden Markov Models.

    PDB_Amyloid

    Live list of the amyloid- and amyloid precursor molecules from the PDB

    Protein sequence analysis

    Find occurrences of a short amino acid sequence in UniProt, allowing wildcards and alternative amino acids.

    Giant Virus Finder
    The Giant Virus Finder is a software package for finding giant viruses in metagenomes.

    Decomp
    PDB Decomposition Tool.

    ProtDict

    Find proteins by lots of different identifiers, using our protein cross reference database.

    Brownian Motion Simulator
    Estimating the minimum passage time and docking ratio of nanoparticles to a specified target.

    Nascent
    Protein-Protein Physical Interaction Network Mapper.

    SwissAlign
    Fast and Exact Sequence Alignment with the Smith-Waterman Algorithm.
    Copyright PIT Bioinformatics Group, 2005-2024
    Login
    Iconic One Theme | Powered by Wordpress