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Department of Computer Science, Eötvös University
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    • AmphoraNetThe webserver implementation of the AMPHORA2 workflow for phylogenetic analysis of metagenomic shotgun sequencing data
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AmphoraNet publication available online

By root | October 20, 2013
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We are pleased to announce that our article about AmphoraNet is available online:

Csaba Kerepesi, Dániel Bánky, Vince Grolmusz: AmphoraNet: The Webserver Implementation of the AMPHORA2 MetagenomicWorkflow Suite

Category: Publications
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Budapest Reference Connectome

View a parameterizable connectome (brain graph).

AmphoraNet
The webserver implementation of the AMPHORA2 workflow for phylogenetic analysis of metagenomic shotgun sequencing data.

AmphoraVizu
Chart visualization for metagenomics analysis tools AMPHORA2 and AmphoraNet.

SCARF

Free online association rule mining tool.

SECLAF

Sequence classification using deep learning

MetaHMM
Find genes in metagenomes, using Hidden Markov Models.

PDB_Amyloid

Live list of the amyloid- and amyloid precursor molecules from the PDB

Protein sequence analysis

Find occurrences of a short amino acid sequence in UniProt, allowing wildcards and alternative amino acids.

Giant Virus Finder
The Giant Virus Finder is a software package for finding giant viruses in metagenomes.

Decomp
PDB Decomposition Tool.

ProtDict

Find proteins by lots of different identifiers, using our protein cross reference database.

Brownian Motion Simulator
Estimating the minimum passage time and docking ratio of nanoparticles to a specified target.

Nascent
Protein-Protein Physical Interaction Network Mapper.

SwissAlign
Fast and Exact Sequence Alignment with the Smith-Waterman Algorithm.
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