PIT Bioinformatics Group
Department of Computer Science, Eötvös University
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  • Online tools
    • AmphoraNetThe webserver implementation of the AMPHORA2 workflow for phylogenetic analysis of metagenomic shotgun sequencing data
    • AmphoraVizuChart visualization for metagenomics analysis tools AMPHORA2 and AmphoraNet
    • Giant Virus FinderSoftware for finding giant viruses in metagenomes
    • Brownian SimulatorEstimate the minimum passage time and docking ratio of nanoparticles to a specified target
    • Budapest ConnectomeView a parameterizable connectome (brain graph)
    • DecompPDB entry correction and decomposition
    • MetaHMMFind genes in metagenomes, using Hidden Markov Models
    • PDB_AmyloidLive list of amyloid and amyloid-precursor proteins from the PDB
    • NascentPredict a protein-protein physical interaction network
    • ProtDictFind proteins by lots of different identifiers
    • Protein Sequence AnalysisFind matches of a short amino acid sequence in UniProt, allowing wildcards and alternatives
    • QuickKEGGFind UniProt codes for a KEGG reaction in an organism
    • SCARFFree online association rule mining tool
    • SECLAFSequence classification with neural networks
    • SwissAlignAlign a SwissProt sequence to all sequences of a taxonomy group
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Online tools

  • AmphoraNet
  • AmphoraVizu
  • Brownian Motion Simulator
  • Budapest Reference Connectome
  • Decomp
  • MetaHMM
  • Nascent
  • ProtDict
  • Protein Sequence Analysis
  • QuickKEGG
  • SECLAF
  • SCARF
  • SwissAlign

Budapest Reference Connectome

View a parameterizable connectome (brain graph).

AmphoraNet
The webserver implementation of the AMPHORA2 workflow for phylogenetic analysis of metagenomic shotgun sequencing data.

AmphoraVizu
Chart visualization for metagenomics analysis tools AMPHORA2 and AmphoraNet.

SCARF

Free online association rule mining tool.

SECLAF

Sequence classification using deep learning

MetaHMM
Find genes in metagenomes, using Hidden Markov Models.

PDB_Amyloid

Live list of the amyloid- and amyloid precursor molecules from the PDB

Protein sequence analysis

Find occurrences of a short amino acid sequence in UniProt, allowing wildcards and alternative amino acids.

Giant Virus Finder
The Giant Virus Finder is a software package for finding giant viruses in metagenomes.

Decomp
PDB Decomposition Tool.

ProtDict

Find proteins by lots of different identifiers, using our protein cross reference database.

Brownian Motion Simulator
Estimating the minimum passage time and docking ratio of nanoparticles to a specified target.

Nascent
Protein-Protein Physical Interaction Network Mapper.

SwissAlign
Fast and Exact Sequence Alignment with the Smith-Waterman Algorithm.
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